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view scripts/io/textscan.m @ 14853:72b8b39e12be
doc: Periodic grammarcheck of documentation.
* contrib.txi, diagperm.txi, emacs.txi, install.txi, package.txi, plot.txi,
poly.txi, vectorize.txi, strread.m, textscan.m, graphics_toolkit.m, bicg.m,
bicgstab.m, cgs.m, rand.cc, data.cc: Periodic grammarcheck of documentation.
author | Rik <octave@nomad.inbox5.com> |
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date | Mon, 09 Jul 2012 10:34:43 -0700 |
parents | a922f768ee09 |
children | 5d3a684236b0 |
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## Copyright (C) 2010-2012 Ben Abbott <bpabbott@mac.com> ## ## This file is part of Octave. ## ## Octave is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or (at ## your option) any later version. ## ## Octave is distributed in the hope that it will be useful, but ## WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ## General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with Octave; see the file COPYING. If not, see ## <http://www.gnu.org/licenses/>. ## -*- texinfo -*- ## @deftypefn {Function File} {@var{C} =} textscan (@var{fid}, @var{format}) ## @deftypefnx {Function File} {@var{C} =} textscan (@var{fid}, @var{format}, @var{n}) ## @deftypefnx {Function File} {@var{C} =} textscan (@var{fid}, @var{format}, @var{param}, @var{value}, @dots{}) ## @deftypefnx {Function File} {@var{C} =} textscan (@var{fid}, @var{format}, @var{n}, @var{param}, @var{value}, @dots{}) ## @deftypefnx {Function File} {@var{C} =} textscan (@var{str}, @dots{}) ## @deftypefnx {Function File} {[@var{C}, @var{position}] =} textscan (@var{fid}, @dots{}) ## Read data from a text file or string. ## ## The string @var{str} or file associated with @var{fid} is read from and ## parsed according to @var{format}. The function behaves like @code{strread} ## except it can also read from file instead of a string. See the documentation ## of @code{strread} for details. ## ## In addition to the options supported by @code{strread}, this function ## supports a few more: ## ## @itemize ## @item "collectoutput": ## A value of 1 or true instructs textscan to concatenate consecutive columns ## of the same class in the output cell array. A value of 0 or false (default) ## leaves output in distinct columns. ## ## @item "endofline": ## Specify "\r", "\n" or "\r\n" (for CR, LF, or CRLF). If no value is given, ## it will be inferred from the file. If set to "" (empty string) EOLs are ## ignored as delimiters and added to whitespace. ## ## @item "headerlines": ## The first @var{value} number of lines of @var{fid} are skipped. ## ## @item "returnonerror": ## If set to numerical 1 or true (default), return normally when read errors ## have been encountered. If set to 0 or false, return an error and no data. ## As the string or file is read by columns rather than by rows, and because ## textscan is fairly forgiving as regards read errors, setting this option ## may have little or no actual effect. ## @end itemize ## ## When reading from a character string, optional input argument @var{n} ## specifies the number of times @var{format} should be used (i.e., to limit ## the amount of data read). ## When reading from file, @var{n} specifies the number of data lines to read; ## in this sense it differs slightly from the format repeat count in strread. ## ## The output @var{C} is a cell array whose second dimension is determined ## by the number of format specifiers. ## ## The second output, @var{position}, provides the position, in characters, ## from the beginning of the file. ## ## @seealso{dlmread, fscanf, load, strread, textread} ## @end deftypefn function [C, position] = textscan (fid, format = "%f", varargin) BUFLENGTH = 4096; ## Read buffer ## Check input if (nargin < 1) print_usage (); endif if (isempty (format)) format = "%f"; endif if (! ischar (format)) error ("textscan: FORMAT must be a string"); endif ## Determine the number of data fields & initialize output array num_fields = numel (strfind (format, "%")) - numel (strfind (format, "%*")); C = cell (1, num_fields); if (! (isa (fid, "double") && fid > 0) && ! ischar (fid)) error ("textscan: first argument must be a file id or character string"); endif args = varargin; if (nargin > 2 && isnumeric (args{1})) nlines = args{1}; else nlines = Inf; endif if (nlines < 1) printf ("textscan: N = 0, no data read\n"); return endif if (! any (strcmpi (args, "emptyvalue"))) ## Matlab returns NaNs for missing values args(end+1:end+2) = {'emptyvalue', NaN}; endif ## Check default parameter values that differ for strread & textread ipos = find (strcmpi (args, "whitespace")); if (isempty (ipos)) ## Matlab default whitespace = " \b\t" args(end+1:end+2) = {'whitespace', " \b\t"}; whitespace = " \b\t"; else ## Check if there's at least one string format specifier has_str_fmt = regexp (format, '%[*]?\d*s', "once"); ## If there is a string format AND whitespace value = empty, ## don't add a space (char(32)) to whitespace if (! (isempty (args{ipos+1}) && has_str_fmt)) args{ipos+1} = unique ([" ", args{ipos+1}]); endif endif if (! any (strcmpi (args, "delimiter"))) ## Matlab says default delimiter = whitespace. ## strread() will pick this up further args(end+1:end+2) = {'delimiter', ""}; endif collop = false; ipos = find (strcmpi (args, "collectoutput")); if (! isempty (ipos)) ## Search & concatenate consecutive columns of same class requested if (isscalar (args{ipos+1}) && (islogical (args{ipos+1}) || isnumeric (args{ipos+1}))) collop = args{ipos+1}; else warning ("textscan: illegal value for CollectOutput parameter - ignored"); endif ## Remove argument before call to strread() below args(ipos:ipos+1) = []; endif if (any (strcmpi (args, "returnonerror"))) ## Because of the way strread() reads data (columnwise) this parameter ## can't be neatly implemented. strread() will pick it up anyway warning ('textscan: ReturnOnError is not fully implemented'); else ## Set default value (=true) args(end+1:end+2) = {"returnonerror", 1}; endif if (ischar (fid)) ## Read from a text string if (nargout == 2) error ("textscan: cannot provide position information for character input"); endif str = fid; else st_pos = ftell (fid); ## Skip header lines if requested headerlines = find (strcmpi (args, "headerlines"), 1); ## Beware of zero valued headerline, fskipl would skip to EOF if (! isempty (headerlines) && (args{headerlines + 1} > 0)) fskipl (fid, args{headerlines + 1}); args(headerlines:headerlines+1) = []; st_pos = ftell (fid); endif ## Read a first file chunk. Rest follows after endofline processing [str, count] = fscanf (fid, "%c", BUFLENGTH); endif ## Check for empty result if (isempty (str)) warning ("textscan: no data read"); return; endif ## Check value of 'endofline'. String or file doesn't seem to matter endofline = find (strcmpi (args, "endofline"), 1); if (! isempty (endofline)) if (ischar (args{endofline + 1})) eol_char = args{endofline + 1}; if (! any (strcmp (eol_char, {"", "\n", "\r", "\r\n"}))) error ("textscan: illegal EndOfLine character value specified"); endif else error ("textscan: character value required for EndOfLine"); endif else ## Determine EOL from file. Search for EOL candidates in first BUFLENGTH chars eol_srch_len = min (length (str), BUFLENGTH); ## First try DOS (CRLF) if (! isempty (strfind ("\r\n", str(1 : eol_srch_len)))) eol_char = "\r\n"; ## Perhaps old Macintosh? (CR) elseif (! isempty (strfind ("\r", str(1 : eol_srch_len)))) eol_char = "\r"; ## Otherwise, use plain UNIX (LF) else eol_char = "\n"; endif ## Set up the default endofline param value args(end+1:end+2) = {"endofline", eol_char}; endif if (!ischar (fid)) ## Now that we know what EOL looks like, we can process format_repeat_count. ## FIXME The below isn't ML-compatible: counts lines, not format string uses if (isfinite (nlines) && (nlines >= 0)) l_eol_char = length (eol_char); eoi = findstr (str, eol_char); n_eoi = length (eoi); nblks = 0; ## Avoid slow repeated str concatenation, first seek requested end of data while (n_eoi < nlines && count == BUFLENGTH) [nstr, count] = fscanf (fid, "%c", BUFLENGTH); if (count > 0) ## Watch out for multichar EOL being missed across buffer boundaries if (l_eol_char > 1) str = [str(end - length (eol_char) + 2 : end) nstr]; else str = nstr; endif eoi = findstr (str, eol_char); n_eoi += numel (eoi); ++nblks; endif endwhile ## OK, found EOL delimiting last requested line. Compute ptr (incl. EOL) if (isempty (eoi)) printf ("textscan: format repeat count specified but no endofline found\n"); data_size = nblks * BUFLENGTH + count; else ## Compute data size to read incl complete EOL data_size = (nblks * BUFLENGTH) + eoi(end + min (nlines, n_eoi) - n_eoi) \ + l_eol_char - 1; endif fseek (fid, st_pos, "bof"); str = fscanf (fid, "%c", data_size); else fseek (fid, st_pos, "bof"); str = fread (fid, "char=>char").'; endif endif ## Determine the number of data fields num_fields = numel (strfind (format, "%")) - numel (strfind (format, "%*")); ## Strip trailing EOL to avoid returning stray missing values (f. strread). ## However, in case of CollectOutput request, presence of EOL is required eol_at_end = strcmp (str(end-length (eol_char) + 1 : end), eol_char); if (collop) if (! eol_at_end) str(end+1 : end+length (eol_char)) = eol_char; endif elseif (eol_at_end) str(end-length (eol_char) + 1 : end) = ""; ## A corner case: str may now be empty.... if (isempty (str)); return; endif endif ## Call strread to make it do the real work C = cell (1, num_fields); [C{:}] = strread (str, format, args{:}); ## If requested, collect output columns of same class if (collop) C = colloutp (C); endif if (nargout == 2) ## Remember file position (persistent var) position = ftell (fid); endif endfunction ## Collect consecutive columns of same class into one cell column function C = colloutp (C) ## Start at rightmost column and work backwards to avoid ptr mixup ii = numel (C); while (ii > 1) clss1 = class (C{ii}); jj = ii; while (jj > 1 && strcmp (clss1, class (C{jj - 1}))) ## Column to the left is still same class; check next column to the left --jj; endwhile if (jj < ii) ## Concatenate columns into current column C{jj} = [C{jj : ii}]; ## Wipe concatenated columns to the right, resume search to the left C(jj+1 : ii) = []; ii = jj - 1; else ## No similar class in column to the left, search from there --ii; endif endwhile endfunction %!test %! str = "1, 2, 3, 4\n 5, , , 8\n 9, 10, 11, 12"; %! fmtstr = "%f %d %f %s"; %! c = textscan (str, fmtstr, 2, "delimiter", ",", "emptyvalue", -Inf); %! assert (isequal (c{1}, [1;5])); %! assert (length (c{1}), 2); %! assert (iscellstr (c{4})); %! assert (isequal (c{3}, [3; -Inf])); %!test %! b = [10:10:100]; %! b = [b; 8*b/5]; %! str = sprintf ("%g miles/hr = %g kilometers/hr\n", b); %! fmt = "%f miles/hr = %f kilometers/hr"; %! c = textscan (str, fmt); %! assert (b(1,:)', c{1}, 1e-5); %! assert (b(2,:)', c{2}, 1e-5); %!test %! str = "13, 72, NA, str1, 25\r\n// Middle line\r\n36, na, 05, str3, 6"; %! a = textscan (str, "%d %n %f %s %n", "delimiter", ",","treatAsEmpty", {"NA", "na"},"commentStyle", "//"); %! assert (a{1}, int32([13; 36])); %! assert (a{2}, [72; NaN]); %! assert (a{3}, [NaN; 5]); %! assert (a{4}, {"str1"; "str3"}); %! assert (a{5}, [25; 6]); %!test %! str = "Km:10 = hhhBjjj miles16hour\r\n"; %! str = [str "Km:15 = hhhJjjj miles241hour\r\n"]; %! str = [str "Km:2 = hhhRjjj miles3hour\r\n"]; %! str = [str "Km:25 = hhhZ\r\n"]; %! fmt = "Km:%d = hhh%1sjjj miles%dhour"; %! a = textscan (str, fmt, "delimiter", " "); %! assert (a{1}', int32([10 15 2 25])); %! assert (a{2}', {'B' 'J' 'R' 'Z'}); %! assert (a{3}', int32([16 241 3 0])); %% Test with default endofline parameter %!test %! c = textscan ("L1\nL2", "%s"); %! assert (c{:}, {"L1"; "L2"}); %% Test with endofline parameter set to "" (empty) - newline should be in word %!test %! c = textscan ("L1\nL2", "%s", "endofline", ""); %! assert (int8(c{:}{:}), int8([ 76, 49, 10, 76, 50 ])); %!test %! # No delimiters at all besides EOL. Skip fields, even empty fields %! str = "Text1Text2Text\nTextText4Text\nText57Text"; %! c = textscan (str, "Text%*dText%dText"); %! assert (c{1}, int32 ([2; 4; 0])); %!test %% CollectOutput test %! b = [10:10:100]; %! b = [b; 8*b/5; 8*b*1000/5]; %! str = sprintf ("%g miles/hr = %g (%g) kilometers (meters)/hr\n", b); %! fmt = "%f miles%s %s %f (%f) kilometers %*s"; %! c = textscan (str, fmt, "collectoutput", 1); %! assert (size(c{3}), [10, 2]); %! assert (size(c{2}), [10, 2]); %!test %% CollectOutput test with uneven column length files %! b = [10:10:100]; %! b = [b; 8*b/5; 8*b*1000/5]; %! str = sprintf ("%g miles/hr = %g (%g) kilometers (meters)/hr\n", b); %! str = [str "110 miles/hr"]; %! fmt = "%f miles%s %s %f (%f) kilometers %*s"; %! c = textscan (str, fmt, "collectoutput", 1); %! assert (size(c{1}), [11, 1]); %! assert (size(c{3}), [11, 2]); %! assert (size(c{2}), [11, 2]); %! assert (c{3}(end), NaN); %! assert (c{2}{11, 1}, "/hr"); %! assert (isempty (c{2}{11, 2}), true); %% Test input validation %!error textscan () %!error textscan (single (4)) %!error textscan ({4}) %!error <must be a string> textscan ("Hello World", 2) %!error <cannot provide position information> [C, pos] = textscan ("Hello World") %!error <character value required> textscan ("Hello World", '%s', 'EndOfLine', 3) %! Test incomplete first data line %! R = textscan (['Empty1' char(10)], 'Empty%d %f'); %! assert (R{1}, int32(1)); %! assert (isempty(R{2}), true);