Mercurial > hg > octave-lyh
view scripts/statistics/tests/mcnemar_test.m @ 12856:cad4cba03f19
Deprecate corrcoef, cor and replace with Matlab equivalent corr
The value calculated by Octave's corrcoef and cor are the
same as the value calculated by the Matlab function corr.
Use MathWorks naming convention for this functionality.
* corr.m: New file with functionality of corrcoef.m
* cov.m, kendall.m, spearman.m, cor_test.m: Adjust scripts to call corr()
* statistics/base/module.mk, deprecated/module.mk: Inform Automake about
deprecated functions
* NEWS: Inform users about deprecation
* stats.txi: Add corr() to documentation.
author | Rik <octave@nomad.inbox5.com> |
---|---|
date | Sat, 16 Jul 2011 20:38:00 -0700 |
parents | fd0a3ac60b0e |
children | 984359717d71 |
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## Copyright (C) 1996-2011 Kurt Hornik ## ## This file is part of Octave. ## ## Octave is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or (at ## your option) any later version. ## ## Octave is distributed in the hope that it will be useful, but ## WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ## General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with Octave; see the file COPYING. If not, see ## <http://www.gnu.org/licenses/>. ## -*- texinfo -*- ## @deftypefn {Function File} {[@var{pval}, @var{chisq}, @var{df}] =} mcnemar_test (@var{x}) ## For a square contingency table @var{x} of data cross-classified on ## the row and column variables, McNemar's test can be used for testing ## the null hypothesis of symmetry of the classification probabilities. ## ## Under the null, @var{chisq} is approximately distributed as chisquare ## with @var{df} degrees of freedom. ## ## The p-value (1 minus the CDF of this distribution at @var{chisq}) is ## returned in @var{pval}. ## ## If no output argument is given, the p-value of the test is displayed. ## @end deftypefn ## Author: KH <Kurt.Hornik@wu-wien.ac.at> ## Description: McNemar's test for symmetry function [pval, chisq, df] = mcnemar_test (x) if (nargin != 1) print_usage (); endif if (! (min (size (x)) > 1) && issquare (x)) error ("mcnemar_test: X must be a square matrix of size > 1"); elseif (! (all (all (x >= 0)) && all (all (x == round (x))))) error ("mcnemar_test: all entries of X must be nonnegative integers"); endif r = rows (x); df = r * (r - 1) / 2; if (r == 2) num = max (abs (x - x') - 1, 0) .^ 2; else num = abs (x - x') .^ 2; endif chisq = sum (sum (triu (num ./ (x + x'), 1))); pval = 1 - chi2cdf (chisq, df); if (nargout == 0) printf (" pval: %g\n", pval); endif endfunction