annotate scripts/statistics/tests/f_test_regression.m @ 3456:434790acb067

[project @ 2000-01-19 06:58:51 by jwe]
author jwe
date Wed, 19 Jan 2000 06:59:23 +0000
parents d8b731d3f7a3
children e031284eea27
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
1 ## Copyright (C) 1995, 1996, 1997 Kurt Hornik
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
2 ##
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
3 ## This program is free software; you can redistribute it and/or modify
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
4 ## it under the terms of the GNU General Public License as published by
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
5 ## the Free Software Foundation; either version 2, or (at your option)
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
6 ## any later version.
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
7 ##
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
8 ## This program is distributed in the hope that it will be useful, but
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
9 ## WITHOUT ANY WARRANTY; without even the implied warranty of
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
10 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
11 ## General Public License for more details.
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
12 ##
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
13 ## You should have received a copy of the GNU General Public License
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
14 ## along with this file. If not, write to the Free Software Foundation,
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
15 ## 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
16
3454
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
17 ## -*- texinfo -*-
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
18 ## @deftypefn {Function File} {[@var{pval}, @var{f}, @var{df_num}, @var{df_den}] =} f_test_regression (@var{y}, @var{X}, @var{R}, @var{r})
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
19 ## Perform an F test for the null hypothesis R * b = r in a classical
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
20 ## normal regression model y = X * b + e.
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
21 ##
3454
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
22 ## Under the null, the test statistic @var{f} follows an F distribution
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
23 ## with @var{df_num} and @var{df_den} degrees of freedom.
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
24 ##
3454
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
25 ## The p-value (1 minus the CDF of this distribution at @var{f}) is
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
26 ## returned in @var{pval}.
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
27 ##
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
28 ## If not given explicitly, @var{r} = 0.
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
29 ##
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
30 ## If no output argument is given, the p-value is displayed.
3454
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
31 ## @end deftypefn
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
32
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
33 ## Author: KH <Kurt.Hornik@ci.tuwien.ac.at>
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
34 ## Description: Test linear hypotheses in linear regression model
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
35
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
36 function [pval, f, df_num, df_den] = f_test_regression (y, X, R, r)
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
37
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
38 if (nargin < 3 || nargin > 4)
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
39 usage ("[pval, f, df_num, df_den] = f_test_regression (y, X, R, r)");
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
40 endif
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
41
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
42 [T, k] = size (X);
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
43 if !( is_vector (y) && (length (y) == T) )
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
44 error ("f_test_regression: y must be a vector of length rows (X)");
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
45 endif
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
46 y = reshape (y, T, 1);
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
47
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
48 [q, c_R ] = size (R);
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
49 if (c_R != k)
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
50 error (["f_test_regression: ", ...
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
51 "R must have as many columns as X."]);
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
52 endif
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
53
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
54 if (nargin == 4)
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
55 s_r = size (r);
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
56 if ((min (s_r) != 1) || (max (s_r) != q))
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
57 error (["f_test_regression: ", ...
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
58 "r must be a vector of length rows (R)."]);
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
59 endif
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
60 r = reshape (r, q, 1);
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
61 else
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
62 r = zeros (q, 1);
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
63 endif
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
64
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
65 df_num = q;
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
66 df_den = T - k;
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
67
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
68 [b, v] = ols (y, X);
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
69 diff = R * b - r;
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
70 f = diff' * inv (R * inv (X' * X) * R') * diff / ( q * v );
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
71 pval = 1 - f_cdf (f, df_num, df_den);
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3200
diff changeset
72
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
73 if (nargout == 0)
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
74 printf (" pval: %g\n", pval);
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
75 endif
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
76
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
77 endfunction