## Copyright (C) 2015, Carlo de Falco
## Copyright (C) 2013, Roberto Porcu' <roberto.porcu@polimi.it>
##
## This file is part of Octave.
##
## Octave is free software; you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 3 of the License, or (at
## your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
## General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <http://www.gnu.org/licenses/>.

## -*- texinfo -*-
## @deftypefn {Function File} {[@var{t}, @var{y}] =} integrate_adaptive (@var{@@stepper}, @var{order}, @var{@@fun}, @var{tspan}, @var{x0}, @var{options})
##
## This function file can be called by an ODE solver function in order to
## integrate the set of ODEs on the interval @var{[t0,t1]} with an
## adaptive timestep.
##
## This function must be called with two output arguments: @var{t} and @var{y}.
## Variable @var{t} is a column vector and contains the time stamps, instead
## @var{y} is a matrix in which each column refers to a different unknown
## of the problem and the rows number is the same of @var{t} rows number so
## that each row of @var{y} contains the values of all unknowns at the time
## value contained in the corresponding row in @var{t}.
##
## The first input argument must be a function_handle or an inline function
## representing the stepper, that is the function responsible for step-by-step
## integration.  This function discriminates one method from the others.
##
## The second input argument is the order of the stepper.  It is needed
## to compute the adaptive timesteps.
##
## The third input argument is a function_handle or an inline function that
## defines the set of ODE:
## @ifhtml
## @example
## @math{y' = f(t,y)}
## @end example
## @end ifhtml
## @ifnothtml
## @math{y' = f(t,y)}.
## @end ifnothtml
##
## The fourth input argument is the time vector which defines integration
## interval, that is @var{[tspan(1),tspan(end)]} and all the intermediate
## elements are taken as times at which the solution is required.
##
## The fifth argument represents the initial conditions for the ODEs and the
## last input argument contains some options that may be needed for the stepper.
##
## @end deftypefn
##
## @seealso{integrate_const, integrate_n_steps}

function solution = integrate_adaptive (stepper, order, func, tspan, x0, options)

  solution = struct ();

  ## first values for time and solution
  t = tspan(1);
  x = x0(:);
  
  ## get first initial timestep
  dt = odeget (options, "InitialStep",
               starting_stepsize (order, func, t, x, options.AbsTol,
                                  options.RelTol, options.vnormcontrol),
               "fast_not_empty");
  vdirection = odeget (options, "vdirection", [], "fast");
  if (sign (dt) != vdirection)
    dt = -dt;
  endif
  dt = vdirection * min (abs (dt), options.MaxStep);

  ## Set parameters
  k = length (tspan);
  counter = 2;
  comp = 0.0;
  tk = tspan(1);
  options.comp = comp;
  
  ## Factor multiplying the stepsize guess
  facmin = 0.8;
  fac = 0.38^(1/(order+1));  # formula taken from Hairer
  t_caught = false;


  ## Initialize the OutputFcn
  if (options.vhaveoutputfunction)
    if (options.vhaveoutputselection)
      solution.vretout = x(options.OutputSel,end);
    else 
      solution.vretout = x;
    endif
    feval (options.OutputFcn, tspan, solution.vretout,
           "init", options.vfunarguments{:});
  endif

  ## Initialize the EventFcn
  if (options.vhaveeventfunction)
    odepkg_event_handle (options.Events, t(end), x,
                         "init", options.vfunarguments{:});
  endif

  solution.vcntloop = 2;
  solution.vcntcycles = 1;
  vcntiter = 0;
  solution.vunhandledtermination = true;
  solution.vcntsave = 2;
  
  z = t;
  u = x;

  k_vals = []; 
  
  while (counter <= k)
    facmax = 1.5;

    ## Compute integration step from t to t+dt
    if (isempty (k_vals))
      [s, y, y_est, new_k_vals] = stepper (func, z(end), u(:,end),
                                           dt, options);
    else
      [s, y, y_est, new_k_vals] = stepper (func, z(end), u(:,end),
                                           dt, options, k_vals);
    endif
    
    if (options.vhavenonnegative)
      x(options.NonNegative,end) = abs (x(options.NonNegative,end));
      y(options.NonNegative,end) = abs (y(options.NonNegative,end));
      y_est(options.NonNegative,end) = abs (y_est(options.NonNegative,end));
    endif

    if (options.vhaveoutputfunction && options.vhaverefine)
      vSaveVUForRefine = u(:,end);
    endif

    err = AbsRel_Norm (y(:,end), u(:,end), options.AbsTol, options.RelTol,
                       options.vnormcontrol, y_est(:,end));
    
    ## Solution accepted only if the error is less or equal to 1.0
    if (err <= 1)
      
      [tk, options.comp] = kahan (tk, options.comp, dt);
      s(end) = tk;

      ## values on this interval for time and solution
      z = [z(end); s];
      u = [u(:,end), y];
      k_vals = new_k_vals;
      
      ## if next tspan value is caught, update counter
      if ((z(end) == tspan(counter))
          || (abs (z(end) - tspan(counter)) /
              (max (abs (z(end)), abs (tspan(counter)))) < 8*eps) )
        counter++;
        
        ## if there is an element in time vector at which the solution is
        ## required the program must compute this solution before going on with
        ## next steps
      elseif (vdirection * z(end) > vdirection * tspan(counter))

        ## initialize counter for the following cycle
        i = 2;
        while (i <= length (z))

          ## if next tspan value is caught, update counter
          if ((counter <= k)
              && ((z(i) == tspan(counter))
                  || (abs (z(i) - tspan(counter)) /
                      (max (abs (z(i)), abs (tspan(counter)))) < 8*eps)) )
            counter++;
          endif
          ## else, loop until there are requested values inside this subinterval
          while ((counter <= k)
                 && (vdirection * z(i) > vdirection * tspan(counter)))
            ## choose interpolation scheme according to order of the solver

            u_interp = ...
            ode_rk_interpolate (order, [z(i-1) z(i)], [u(:,i-1) u(:,i)],
                                tspan(counter), k_vals, dt,
                                options.vfunarguments{:});
            

            ## add the interpolated value of the solution
            u = [u(:,1:i-1), u_interp, u(:,i:end)];
            
            ## add the time requested
            z = [z(1:i-1); tspan(counter); z(i:end)];

            ## update counters
            counter++;
            i++;
          endwhile

          ## if new time requested is not out of this interval
          if ((counter <= k)
              && (vdirection * z(end) > vdirection * tspan(counter)))
            ## update the counter
            i++;
          else
            ## stop the cycle and go on with the next iteration
            i = length (z) + 1;
          endif

        endwhile
      endif

      if (mod (solution.vcntloop-1, options.OutputSave) == 0)
        x = [x,u(:,2:end)];
        t = [t;z(2:end)];
        solution.vcntsave = solution.vcntsave + 1;    
      endif
      solution.vcntloop = solution.vcntloop + 1;
      vcntiter = 0;
      
      ## Call plot only if a valid result has been found, therefore this
      ## code fragment has moved here.  Stop integration if plot function
      ## returns false
      if (options.vhaveoutputfunction)
        for vcnt = 0:options.Refine  # Approximation between told and t
          if (options.vhaverefine)   # Do interpolation
            vapproxtime = (vcnt + 1) / (options.Refine + 2);
            vapproxvals = (1 - vapproxtime) * vSaveVUForRefine ...
                          + (vapproxtime) * y(:,end);
            vapproxtime = s(end) + vapproxtime * dt;
          else
            vapproxvals = x(:,end);
            vapproxtime = t(end);
          endif
          if (options.vhaveoutputselection)
            vapproxvals = vapproxvals(options.OutputSel);
          endif
          vpltret = feval (options.OutputFcn, vapproxtime,
                           vapproxvals, [], options.vfunarguments{:});
          if (vpltret)  # Leave refinement loop
            break;
          endif
        endfor
        if (vpltret)  # Leave main loop
          solution.vunhandledtermination = false;
          break;
        endif
      endif
      
      ## Call event only if a valid result has been found, therefore this
      ## code fragment has moved here.  Stop integration if veventbreak is
      ## true
      if (options.vhaveeventfunction)
        solution.vevent = odepkg_event_handle (options.Events, t(end),
                                               x(:,end), [],
                                               options.vfunarguments{:});
        if (! isempty (solution.vevent{1})
            && solution.vevent{1} == 1)
          t(solution.vcntloop-1,:) = solution.vevent{3}(end,:);
          x(:,solution.vcntloop-1) = solution.vevent{4}(end,:)';
          solution.vunhandledtermination = false; 
          break;
        endif
      endif
      
    else
      
      facmax = 1.0;
      
    endif
    
    ## Compute next timestep, formula taken from Hairer
    err += eps;    # adding an eps to avoid divisions by zero
    dt = dt * min (facmax,
                   max (facmin, fac * (1 / err)^(1 / (order + 1))));
    dt = vdirection * min (abs (dt), options.MaxStep);
    
    ## Update counters that count the number of iteration cycles
    solution.vcntcycles += 1;  # Needed for cost statistics
    vcntiter += 1;  # Needed to find iteration problems

    ## Stop solving because in the last 1000 steps no successful valid
    ## value has been found
    if (vcntiter >= 5000)
      error (["Solving has not been successful.  The iterative",
              " integration loop exited at time t = %f before endpoint at",
              " tend = %f was reached.  This happened because the iterative",
              " integration loop does not find a valid solution at this time",
              " stamp.  Try to reduce the value of 'InitialStep' and/or",
              " 'MaxStep' with the command 'odeset'.\n"],
             s(end), tspan(end));
    endif

    ## if this is the last iteration, save the length of last interval
    if (counter > k)
      j = length (z);
    endif
  endwhile
  
  ## Check if integration of the ode has been successful
  if (vdirection * z(end) < vdirection * tspan(end))
    if (solution.vunhandledtermination == true)
      error ("OdePkg:InvalidArgument",
             ["Solving has not been successful.  The iterative",
              " integration loop exited at time t = %f",
              " before endpoint at tend = %f was reached.  This may",
              " happen if the stepsize grows smaller than defined in",
              " vminstepsize.  Try to reduce the value of 'InitialStep'",
              " and/or 'MaxStep' with the command 'odeset'.\n"],
             z(end), tspan(end));
    else
      warning ("OdePkg:InvalidArgument",
               ["Solver has been stopped by a call of 'break' in the main",
                " iteration loop at time t = %f before endpoint at tend = %f ",
                " was reached.  This may happen because the @odeplot function",
                " returned 'true' or the @event function returned",
                " 'true'.\n"],
               z(end), tspan(end));
    endif
  endif

  ## Compute how many values are out of time inerval
  d = vdirection * t((end-(j-1)):end) > vdirection * tspan(end)*ones (j, 1);
  f = sum (d);

  ## Remove not-requested values of time and solution
  solution.t = t(1:end-f);
  solution.x = x(:,1:end-f)';
  
endfunction