view scripts/statistics/tests/hotelling_test.m @ 15063:36cbcc37fdb8

Refactor configure.ac to make it more understandable. Use common syntax for messages in config.h Correct typos, refer to libraries in all caps, use two spaces after period. Follow Autoconf guidelines and place general tests before specific tests. * configure.ac, m4/acinclude.m4: Use common syntax for messages in config.h Correct typos, refer to libraries in all caps, use two spaces after period. Follow Autoconf guidelines and place general tests before specific tests.
author Rik <rik@octave.org>
date Tue, 31 Jul 2012 10:28:51 -0700
parents 72c96de7a403
children 1c89599167a6
line wrap: on
line source

## Copyright (C) 1996-2012 Kurt Hornik
##
## This file is part of Octave.
##
## Octave is free software; you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 3 of the License, or (at
## your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
## General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <http://www.gnu.org/licenses/>.

## -*- texinfo -*-
## @deftypefn {Function File} {[@var{pval}, @var{tsq}] =} hotelling_test (@var{x}, @var{m})
## For a sample @var{x} from a multivariate normal distribution with unknown
## mean and covariance matrix, test the null hypothesis that @code{mean
## (@var{x}) == @var{m}}.
##
## Hotelling's @math{T^2} is returned in @var{tsq}.  Under the null,
## @math{(n-p) T^2 / (p(n-1))} has an F distribution with @math{p} and
## @math{n-p} degrees of freedom, where @math{n} and @math{p} are the
## numbers of samples and variables, respectively.
##
## The p-value of the test is returned in @var{pval}.
##
## If no output argument is given, the p-value of the test is displayed.
## @end deftypefn

## Author: KH <Kurt.Hornik@wu-wien.ac.at>
## Description: Test for mean of a multivariate normal

function [pval, Tsq] = hotelling_test (x, m)

  if (nargin != 2)
    print_usage ();
  endif

  if (isvector (x))
    if (! isscalar (m))
      error ("hotelling_test: if X is a vector, M must be a scalar");
    endif
    n = length (x);
    p = 1;
  elseif (ismatrix (x))
    [n, p] = size (x);
    if (n <= p)
      error ("hotelling_test: X must have more rows than columns");
    endif
    if (isvector (m) && length (m) == p)
      m = reshape (m, 1, p);
    else
      error ("hotelling_test: if X is a matrix, M must be a vector of length columns (X)");
    endif
  else
    error ("hotelling_test: X must be a matrix or vector");
  endif

  d    = mean (x) - m;
  Tsq  = n * d * (cov (x) \ d');
  pval = 1 - fcdf ((n-p) * Tsq / (p * (n-1)), p, n-p);

  if (nargout == 0)
    printf ("  pval: %g\n", pval);
  endif

endfunction