view liboctave/numeric/DASRT.cc @ 15271:648dabbb4c6b

build: Refactor liboctave into multiple subdirectories. Move libcruft into liboctave. * array/Array-C.cc, array/Array-b.cc, array/Array-ch.cc, array/Array-d.cc, array/Array-f.cc, array/Array-fC.cc, array/Array-i.cc, array/Array-idx-vec.cc, array/Array-s.cc, array/Array-str.cc, array/Array-util.cc, array/Array-util.h, array/Array-voidp.cc, array/Array.cc, array/Array.h, array/Array2.h, array/Array3.h, array/ArrayN.h, array/CColVector.cc, array/CColVector.h, array/CDiagMatrix.cc, array/CDiagMatrix.h, array/CMatrix.cc, array/CMatrix.h, array/CNDArray.cc, array/CNDArray.h, array/CRowVector.cc, array/CRowVector.h, array/CSparse.cc, array/CSparse.h, array/DiagArray2.cc, array/DiagArray2.h, array/MArray-C.cc, array/MArray-d.cc, array/MArray-decl.h, array/MArray-defs.h, array/MArray-f.cc, array/MArray-fC.cc, array/MArray-i.cc, array/MArray-s.cc, array/MArray.cc, array/MArray.h, array/MArray2.h, array/MArrayN.h, array/MDiagArray2.cc, array/MDiagArray2.h, array/MSparse-C.cc, array/MSparse-d.cc, array/MSparse-defs.h, array/MSparse.cc, array/MSparse.h, array/Matrix.h, array/MatrixType.cc, array/MatrixType.h, array/PermMatrix.cc, array/PermMatrix.h, array/Range.cc, array/Range.h, array/Sparse-C.cc, array/Sparse-b.cc, array/Sparse-d.cc, array/Sparse.cc, array/Sparse.h, array/boolMatrix.cc, array/boolMatrix.h, array/boolNDArray.cc, array/boolNDArray.h, array/boolSparse.cc, array/boolSparse.h, array/chMatrix.cc, array/chMatrix.h, array/chNDArray.cc, array/chNDArray.h, array/dColVector.cc, array/dColVector.h, array/dDiagMatrix.cc, array/dDiagMatrix.h, array/dMatrix.cc, array/dMatrix.h, array/dNDArray.cc, array/dNDArray.h, array/dRowVector.cc, array/dRowVector.h, array/dSparse.cc, array/dSparse.h, array/dim-vector.cc, array/dim-vector.h, array/fCColVector.cc, array/fCColVector.h, array/fCDiagMatrix.cc, array/fCDiagMatrix.h, array/fCMatrix.cc, array/fCMatrix.h, array/fCNDArray.cc, array/fCNDArray.h, array/fCRowVector.cc, array/fCRowVector.h, array/fColVector.cc, array/fColVector.h, array/fDiagMatrix.cc, array/fDiagMatrix.h, array/fMatrix.cc, array/fMatrix.h, array/fNDArray.cc, array/fNDArray.h, array/fRowVector.cc, array/fRowVector.h, array/idx-vector.cc, array/idx-vector.h, array/int16NDArray.cc, array/int16NDArray.h, array/int32NDArray.cc, array/int32NDArray.h, array/int64NDArray.cc, array/int64NDArray.h, array/int8NDArray.cc, array/int8NDArray.h, array/intNDArray.cc, array/intNDArray.h, array/module.mk, array/uint16NDArray.cc, array/uint16NDArray.h, array/uint32NDArray.cc, array/uint32NDArray.h, array/uint64NDArray.cc, array/uint64NDArray.h, array/uint8NDArray.cc, array/uint8NDArray.h: Moved from liboctave dir to array subdirectory. * cruft/Makefile.am, cruft/amos/README, cruft/amos/cacai.f, cruft/amos/cacon.f, cruft/amos/cairy.f, cruft/amos/casyi.f, cruft/amos/cbesh.f, cruft/amos/cbesi.f, cruft/amos/cbesj.f, cruft/amos/cbesk.f, cruft/amos/cbesy.f, cruft/amos/cbinu.f, cruft/amos/cbiry.f, cruft/amos/cbknu.f, cruft/amos/cbuni.f, cruft/amos/cbunk.f, cruft/amos/ckscl.f, cruft/amos/cmlri.f, cruft/amos/crati.f, cruft/amos/cs1s2.f, cruft/amos/cseri.f, cruft/amos/cshch.f, cruft/amos/cuchk.f, cruft/amos/cunhj.f, cruft/amos/cuni1.f, cruft/amos/cuni2.f, cruft/amos/cunik.f, cruft/amos/cunk1.f, cruft/amos/cunk2.f, cruft/amos/cuoik.f, cruft/amos/cwrsk.f, cruft/amos/dgamln.f, cruft/amos/gamln.f, cruft/amos/module.mk, cruft/amos/xzabs.f, cruft/amos/xzexp.f, cruft/amos/xzlog.f, cruft/amos/xzsqrt.f, cruft/amos/zacai.f, cruft/amos/zacon.f, cruft/amos/zairy.f, cruft/amos/zasyi.f, cruft/amos/zbesh.f, cruft/amos/zbesi.f, cruft/amos/zbesj.f, cruft/amos/zbesk.f, cruft/amos/zbesy.f, cruft/amos/zbinu.f, cruft/amos/zbiry.f, cruft/amos/zbknu.f, cruft/amos/zbuni.f, cruft/amos/zbunk.f, cruft/amos/zdiv.f, cruft/amos/zkscl.f, cruft/amos/zmlri.f, cruft/amos/zmlt.f, cruft/amos/zrati.f, cruft/amos/zs1s2.f, cruft/amos/zseri.f, cruft/amos/zshch.f, cruft/amos/zuchk.f, cruft/amos/zunhj.f, cruft/amos/zuni1.f, cruft/amos/zuni2.f, cruft/amos/zunik.f, cruft/amos/zunk1.f, cruft/amos/zunk2.f, cruft/amos/zuoik.f, cruft/amos/zwrsk.f, cruft/blas-xtra/cconv2.f, cruft/blas-xtra/cdotc3.f, cruft/blas-xtra/cmatm3.f, cruft/blas-xtra/csconv2.f, cruft/blas-xtra/dconv2.f, cruft/blas-xtra/ddot3.f, cruft/blas-xtra/dmatm3.f, cruft/blas-xtra/module.mk, cruft/blas-xtra/sconv2.f, cruft/blas-xtra/sdot3.f, cruft/blas-xtra/smatm3.f, cruft/blas-xtra/xcdotc.f, cruft/blas-xtra/xcdotu.f, cruft/blas-xtra/xddot.f, cruft/blas-xtra/xdnrm2.f, cruft/blas-xtra/xdznrm2.f, cruft/blas-xtra/xerbla.f, cruft/blas-xtra/xscnrm2.f, cruft/blas-xtra/xsdot.f, cruft/blas-xtra/xsnrm2.f, cruft/blas-xtra/xzdotc.f, cruft/blas-xtra/xzdotu.f, cruft/blas-xtra/zconv2.f, cruft/blas-xtra/zdconv2.f, cruft/blas-xtra/zdotc3.f, cruft/blas-xtra/zmatm3.f, cruft/daspk/datv.f, cruft/daspk/dcnst0.f, cruft/daspk/dcnstr.f, cruft/daspk/ddasic.f, cruft/daspk/ddasid.f, cruft/daspk/ddasik.f, cruft/daspk/ddaspk.f, cruft/daspk/ddstp.f, cruft/daspk/ddwnrm.f, cruft/daspk/dfnrmd.f, cruft/daspk/dfnrmk.f, cruft/daspk/dhels.f, cruft/daspk/dheqr.f, cruft/daspk/dinvwt.f, cruft/daspk/dlinsd.f, cruft/daspk/dlinsk.f, cruft/daspk/dmatd.f, cruft/daspk/dnedd.f, cruft/daspk/dnedk.f, cruft/daspk/dnsd.f, cruft/daspk/dnsid.f, cruft/daspk/dnsik.f, cruft/daspk/dnsk.f, cruft/daspk/dorth.f, cruft/daspk/dslvd.f, cruft/daspk/dslvk.f, cruft/daspk/dspigm.f, cruft/daspk/dyypnw.f, cruft/daspk/module.mk, cruft/dasrt/ddasrt.f, cruft/dasrt/drchek.f, cruft/dasrt/droots.f, cruft/dasrt/module.mk, cruft/dassl/ddaini.f, cruft/dassl/ddajac.f, cruft/dassl/ddanrm.f, cruft/dassl/ddaslv.f, cruft/dassl/ddassl.f, cruft/dassl/ddastp.f, cruft/dassl/ddatrp.f, cruft/dassl/ddawts.f, cruft/dassl/module.mk, cruft/fftpack/cfftb.f, cruft/fftpack/cfftb1.f, cruft/fftpack/cfftf.f, cruft/fftpack/cfftf1.f, cruft/fftpack/cffti.f, cruft/fftpack/cffti1.f, cruft/fftpack/fftpack.doc, cruft/fftpack/module.mk, cruft/fftpack/passb.f, cruft/fftpack/passb2.f, cruft/fftpack/passb3.f, cruft/fftpack/passb4.f, cruft/fftpack/passb5.f, cruft/fftpack/passf.f, cruft/fftpack/passf2.f, cruft/fftpack/passf3.f, cruft/fftpack/passf4.f, cruft/fftpack/passf5.f, cruft/fftpack/zfftb.f, cruft/fftpack/zfftb1.f, cruft/fftpack/zfftf.f, cruft/fftpack/zfftf1.f, cruft/fftpack/zffti.f, cruft/fftpack/zffti1.f, cruft/fftpack/zpassb.f, cruft/fftpack/zpassb2.f, cruft/fftpack/zpassb3.f, cruft/fftpack/zpassb4.f, cruft/fftpack/zpassb5.f, cruft/fftpack/zpassf.f, cruft/fftpack/zpassf2.f, cruft/fftpack/zpassf3.f, cruft/fftpack/zpassf4.f, cruft/fftpack/zpassf5.f, cruft/lapack-xtra/crsf2csf.f, cruft/lapack-xtra/module.mk, cruft/lapack-xtra/xclange.f, cruft/lapack-xtra/xdlamch.f, cruft/lapack-xtra/xdlange.f, cruft/lapack-xtra/xilaenv.f, cruft/lapack-xtra/xslamch.f, cruft/lapack-xtra/xslange.f, cruft/lapack-xtra/xzlange.f, cruft/lapack-xtra/zrsf2csf.f, cruft/link-deps.mk, cruft/misc/blaswrap.c, cruft/misc/cquit.c, cruft/misc/d1mach-tst.for, cruft/misc/d1mach.f, cruft/misc/f77-extern.cc, cruft/misc/f77-fcn.c, cruft/misc/f77-fcn.h, cruft/misc/i1mach.f, cruft/misc/lo-error.c, cruft/misc/lo-error.h, cruft/misc/module.mk, cruft/misc/quit.cc, cruft/misc/quit.h, cruft/misc/r1mach.f, cruft/mkf77def.in, cruft/odepack/cfode.f, cruft/odepack/dlsode.f, cruft/odepack/ewset.f, cruft/odepack/intdy.f, cruft/odepack/module.mk, cruft/odepack/prepj.f, cruft/odepack/scfode.f, cruft/odepack/sewset.f, cruft/odepack/sintdy.f, cruft/odepack/slsode.f, cruft/odepack/solsy.f, cruft/odepack/sprepj.f, cruft/odepack/ssolsy.f, cruft/odepack/sstode.f, cruft/odepack/stode.f, cruft/odepack/svnorm.f, cruft/odepack/vnorm.f, cruft/ordered-qz/README, cruft/ordered-qz/dsubsp.f, cruft/ordered-qz/exchqz.f, cruft/ordered-qz/module.mk, cruft/ordered-qz/sexchqz.f, cruft/ordered-qz/ssubsp.f, cruft/quadpack/dqagi.f, cruft/quadpack/dqagie.f, cruft/quadpack/dqagp.f, cruft/quadpack/dqagpe.f, cruft/quadpack/dqelg.f, cruft/quadpack/dqk15i.f, cruft/quadpack/dqk21.f, cruft/quadpack/dqpsrt.f, cruft/quadpack/module.mk, cruft/quadpack/qagi.f, cruft/quadpack/qagie.f, cruft/quadpack/qagp.f, cruft/quadpack/qagpe.f, cruft/quadpack/qelg.f, cruft/quadpack/qk15i.f, cruft/quadpack/qk21.f, cruft/quadpack/qpsrt.f, cruft/quadpack/xerror.f, cruft/ranlib/Basegen.doc, cruft/ranlib/HOWTOGET, cruft/ranlib/README, cruft/ranlib/advnst.f, cruft/ranlib/genbet.f, cruft/ranlib/genchi.f, cruft/ranlib/genexp.f, cruft/ranlib/genf.f, cruft/ranlib/gengam.f, cruft/ranlib/genmn.f, cruft/ranlib/genmul.f, cruft/ranlib/gennch.f, cruft/ranlib/gennf.f, cruft/ranlib/gennor.f, cruft/ranlib/genprm.f, cruft/ranlib/genunf.f, cruft/ranlib/getcgn.f, cruft/ranlib/getsd.f, cruft/ranlib/ignbin.f, cruft/ranlib/ignlgi.f, cruft/ranlib/ignnbn.f, cruft/ranlib/ignpoi.f, cruft/ranlib/ignuin.f, cruft/ranlib/initgn.f, cruft/ranlib/inrgcm.f, cruft/ranlib/lennob.f, cruft/ranlib/mltmod.f, cruft/ranlib/module.mk, cruft/ranlib/phrtsd.f, cruft/ranlib/qrgnin.f, cruft/ranlib/randlib.chs, cruft/ranlib/randlib.fdoc, cruft/ranlib/ranf.f, cruft/ranlib/setall.f, cruft/ranlib/setant.f, cruft/ranlib/setgmn.f, cruft/ranlib/setsd.f, cruft/ranlib/sexpo.f, cruft/ranlib/sgamma.f, cruft/ranlib/snorm.f, cruft/ranlib/tstbot.for, cruft/ranlib/tstgmn.for, cruft/ranlib/tstmid.for, cruft/ranlib/wrap.f, cruft/slatec-err/fdump.f, cruft/slatec-err/ixsav.f, cruft/slatec-err/j4save.f, cruft/slatec-err/module.mk, cruft/slatec-err/xerclr.f, cruft/slatec-err/xercnt.f, cruft/slatec-err/xerhlt.f, cruft/slatec-err/xermsg.f, cruft/slatec-err/xerprn.f, cruft/slatec-err/xerrwd.f, cruft/slatec-err/xersve.f, cruft/slatec-err/xgetf.f, cruft/slatec-err/xgetua.f, cruft/slatec-err/xsetf.f, cruft/slatec-err/xsetua.f, cruft/slatec-fn/acosh.f, cruft/slatec-fn/albeta.f, cruft/slatec-fn/algams.f, cruft/slatec-fn/alngam.f, cruft/slatec-fn/alnrel.f, cruft/slatec-fn/asinh.f, cruft/slatec-fn/atanh.f, cruft/slatec-fn/betai.f, cruft/slatec-fn/csevl.f, cruft/slatec-fn/d9gmit.f, cruft/slatec-fn/d9lgic.f, cruft/slatec-fn/d9lgit.f, cruft/slatec-fn/d9lgmc.f, cruft/slatec-fn/dacosh.f, cruft/slatec-fn/dasinh.f, cruft/slatec-fn/datanh.f, cruft/slatec-fn/dbetai.f, cruft/slatec-fn/dcsevl.f, cruft/slatec-fn/derf.f, cruft/slatec-fn/derfc.in.f, cruft/slatec-fn/dgami.f, cruft/slatec-fn/dgamit.f, cruft/slatec-fn/dgamlm.f, cruft/slatec-fn/dgamma.f, cruft/slatec-fn/dgamr.f, cruft/slatec-fn/dlbeta.f, cruft/slatec-fn/dlgams.f, cruft/slatec-fn/dlngam.f, cruft/slatec-fn/dlnrel.f, cruft/slatec-fn/dpchim.f, cruft/slatec-fn/dpchst.f, cruft/slatec-fn/erf.f, cruft/slatec-fn/erfc.in.f, cruft/slatec-fn/gami.f, cruft/slatec-fn/gamit.f, cruft/slatec-fn/gamlim.f, cruft/slatec-fn/gamma.f, cruft/slatec-fn/gamr.f, cruft/slatec-fn/initds.f, cruft/slatec-fn/inits.f, cruft/slatec-fn/module.mk, cruft/slatec-fn/pchim.f, cruft/slatec-fn/pchst.f, cruft/slatec-fn/r9gmit.f, cruft/slatec-fn/r9lgic.f, cruft/slatec-fn/r9lgit.f, cruft/slatec-fn/r9lgmc.f, cruft/slatec-fn/xacosh.f, cruft/slatec-fn/xasinh.f, cruft/slatec-fn/xatanh.f, cruft/slatec-fn/xbetai.f, cruft/slatec-fn/xdacosh.f, cruft/slatec-fn/xdasinh.f, cruft/slatec-fn/xdatanh.f, cruft/slatec-fn/xdbetai.f, cruft/slatec-fn/xderf.f, cruft/slatec-fn/xderfc.f, cruft/slatec-fn/xdgami.f, cruft/slatec-fn/xdgamit.f, cruft/slatec-fn/xdgamma.f, cruft/slatec-fn/xerf.f, cruft/slatec-fn/xerfc.f, cruft/slatec-fn/xgamma.f, cruft/slatec-fn/xgmainc.f, cruft/slatec-fn/xsgmainc.f: Moved from top-level libcruft to cruft directory below liboctave. * numeric/CmplxAEPBAL.cc, numeric/CmplxAEPBAL.h, numeric/CmplxCHOL.cc, numeric/CmplxCHOL.h, numeric/CmplxGEPBAL.cc, numeric/CmplxGEPBAL.h, numeric/CmplxHESS.cc, numeric/CmplxHESS.h, numeric/CmplxLU.cc, numeric/CmplxLU.h, numeric/CmplxQR.cc, numeric/CmplxQR.h, numeric/CmplxQRP.cc, numeric/CmplxQRP.h, numeric/CmplxSCHUR.cc, numeric/CmplxSCHUR.h, numeric/CmplxSVD.cc, numeric/CmplxSVD.h, numeric/CollocWt.cc, numeric/CollocWt.h, numeric/DAE.h, numeric/DAEFunc.h, numeric/DAERT.h, numeric/DAERTFunc.h, numeric/DASPK-opts.in, numeric/DASPK.cc, numeric/DASPK.h, numeric/DASRT-opts.in, numeric/DASRT.cc, numeric/DASRT.h, numeric/DASSL-opts.in, numeric/DASSL.cc, numeric/DASSL.h, numeric/DET.h, numeric/EIG.cc, numeric/EIG.h, numeric/LSODE-opts.in, numeric/LSODE.cc, numeric/LSODE.h, numeric/ODE.h, numeric/ODEFunc.h, numeric/ODES.cc, numeric/ODES.h, numeric/ODESFunc.h, numeric/Quad-opts.in, numeric/Quad.cc, numeric/Quad.h, numeric/SparseCmplxCHOL.cc, numeric/SparseCmplxCHOL.h, numeric/SparseCmplxLU.cc, numeric/SparseCmplxLU.h, numeric/SparseCmplxQR.cc, numeric/SparseCmplxQR.h, numeric/SparseQR.cc, numeric/SparseQR.h, numeric/SparsedbleCHOL.cc, numeric/SparsedbleCHOL.h, numeric/SparsedbleLU.cc, numeric/SparsedbleLU.h, numeric/base-aepbal.h, numeric/base-dae.h, numeric/base-de.h, numeric/base-lu.cc, numeric/base-lu.h, numeric/base-min.h, numeric/base-qr.cc, numeric/base-qr.h, numeric/bsxfun-decl.h, numeric/bsxfun-defs.cc, numeric/bsxfun.h, numeric/dbleAEPBAL.cc, numeric/dbleAEPBAL.h, numeric/dbleCHOL.cc, numeric/dbleCHOL.h, numeric/dbleGEPBAL.cc, numeric/dbleGEPBAL.h, numeric/dbleHESS.cc, numeric/dbleHESS.h, numeric/dbleLU.cc, numeric/dbleLU.h, numeric/dbleQR.cc, numeric/dbleQR.h, numeric/dbleQRP.cc, numeric/dbleQRP.h, numeric/dbleSCHUR.cc, numeric/dbleSCHUR.h, numeric/dbleSVD.cc, numeric/dbleSVD.h, numeric/eigs-base.cc, numeric/fCmplxAEPBAL.cc, numeric/fCmplxAEPBAL.h, numeric/fCmplxCHOL.cc, numeric/fCmplxCHOL.h, numeric/fCmplxGEPBAL.cc, numeric/fCmplxGEPBAL.h, numeric/fCmplxHESS.cc, numeric/fCmplxHESS.h, numeric/fCmplxLU.cc, numeric/fCmplxLU.h, numeric/fCmplxQR.cc, numeric/fCmplxQR.h, numeric/fCmplxQRP.cc, numeric/fCmplxQRP.h, numeric/fCmplxSCHUR.cc, numeric/fCmplxSCHUR.h, numeric/fCmplxSVD.cc, numeric/fCmplxSVD.h, numeric/fEIG.cc, numeric/fEIG.h, numeric/floatAEPBAL.cc, numeric/floatAEPBAL.h, numeric/floatCHOL.cc, numeric/floatCHOL.h, numeric/floatGEPBAL.cc, numeric/floatGEPBAL.h, numeric/floatHESS.cc, numeric/floatHESS.h, numeric/floatLU.cc, numeric/floatLU.h, numeric/floatQR.cc, numeric/floatQR.h, numeric/floatQRP.cc, numeric/floatQRP.h, numeric/floatSCHUR.cc, numeric/floatSCHUR.h, numeric/floatSVD.cc, numeric/floatSVD.h, numeric/lo-mappers.cc, numeric/lo-mappers.h, numeric/lo-specfun.cc, numeric/lo-specfun.h, numeric/module.mk, numeric/oct-convn.cc, numeric/oct-convn.h, numeric/oct-fftw.cc, numeric/oct-fftw.h, numeric/oct-norm.cc, numeric/oct-norm.h, numeric/oct-rand.cc, numeric/oct-rand.h, numeric/oct-spparms.cc, numeric/oct-spparms.h, numeric/randgamma.c, numeric/randgamma.h, numeric/randmtzig.c, numeric/randmtzig.h, numeric/randpoisson.c, numeric/randpoisson.h, numeric/sparse-base-chol.cc, numeric/sparse-base-chol.h, numeric/sparse-base-lu.cc, numeric/sparse-base-lu.h, numeric/sparse-dmsolve.cc: Moved from liboctave dir to numeric subdirectory. * operators/Sparse-diag-op-defs.h, operators/Sparse-op-defs.h, operators/Sparse-perm-op-defs.h, operators/config-ops.sh, operators/mk-ops.awk, operators/module.mk, operators/mx-base.h, operators/mx-defs.h, operators/mx-ext.h, operators/mx-inlines.cc, operators/mx-op-decl.h, operators/mx-op-defs.h, operators/mx-ops, operators/sparse-mk-ops.awk, operators/sparse-mx-ops, operators/vx-ops: Moved from liboctave dir to operators subdirectory. * system/dir-ops.cc, system/dir-ops.h, system/file-ops.cc, system/file-ops.h, system/file-stat.cc, system/file-stat.h, system/lo-sysdep.cc, system/lo-sysdep.h, system/mach-info.cc, system/mach-info.h, system/module.mk, system/oct-env.cc, system/oct-env.h, system/oct-group.cc, system/oct-group.h, system/oct-openmp.h, system/oct-passwd.cc, system/oct-passwd.h, system/oct-syscalls.cc, system/oct-syscalls.h, system/oct-time.cc, system/oct-time.h, system/oct-uname.cc, system/oct-uname.h, system/pathlen.h, system/sysdir.h, system/syswait.h, system/tempnam.c, system/tempname.c: Moved from liboctave dir to system subdirectory. * util/base-list.h, util/byte-swap.h, util/caseless-str.h, util/cmd-edit.cc, util/cmd-edit.h, util/cmd-hist.cc, util/cmd-hist.h, util/data-conv.cc, util/data-conv.h, util/f2c-main.c, util/functor.h, util/glob-match.cc, util/glob-match.h, util/kpse.cc, util/lo-array-gripes.cc, util/lo-array-gripes.h, util/lo-cieee.c, util/lo-cutils.c, util/lo-cutils.h, util/lo-ieee.cc, util/lo-ieee.h, util/lo-macros.h, util/lo-math.h, util/lo-traits.h, util/lo-utils.cc, util/lo-utils.h, util/module.mk, util/oct-alloc.cc, util/oct-alloc.h, util/oct-base64.cc, util/oct-base64.h, util/oct-binmap.h, util/oct-cmplx.h, util/oct-glob.cc, util/oct-glob.h, util/oct-inttypes.cc, util/oct-inttypes.h, util/oct-locbuf.cc, util/oct-locbuf.h, util/oct-md5.cc, util/oct-md5.h, util/oct-mem.h, util/oct-mutex.cc, util/oct-mutex.h, util/oct-refcount.h, util/oct-rl-edit.c, util/oct-rl-edit.h, util/oct-rl-hist.c, util/oct-rl-hist.h, util/oct-shlib.cc, util/oct-shlib.h, util/oct-sort.cc, util/oct-sort.h, util/oct-sparse.h, util/pathsearch.cc, util/pathsearch.h, util/regexp.cc, util/regexp.h, util/singleton-cleanup.cc, util/singleton-cleanup.h, util/sparse-sort.cc, util/sparse-sort.h, util/sparse-util.cc, util/sparse-util.h, util/statdefs.h, util/str-vec.cc, util/str-vec.h, util/sun-utils.h: Moved from liboctave dir to util subdirectory. * Makefile.am: Eliminate reference to top-level liboctave directory. * autogen.sh: cd to new liboctave/operators directory to run config-ops.sh. * build-aux/common.mk: Eliminate LIBCRUFT references. * configure.ac: Eliminate libcruft top-level references. Switch test programs to find files in liboctave/cruft subdirectory. * OctaveFAQ.texi, install.txi, mkoctfile.1: Eliminate references to libcruft in docs. * libgui/src/Makefile.am, libinterp/Makefile.am, src/Makefile.am: Update include file locations. Stop linking against libcruft. * libinterp/corefcn/module.mk: Update location of OPT_INC files which are now in numeric/ subdirectory. * libinterp/dldfcn/config-module.awk: Stop linking against libcruft. * libinterp/interpfcn/toplev.cc: Remove reference to LIBCRUFT. * libinterp/link-deps.mk, liboctave/link-deps.mk: Add GNULIB_LINK_DEPS to link dependencies. * libinterp/oct-conf.in.h: Remove reference to OCTAVE_CONF_LIBCRUFT. * liboctave/Makefile.am: Overhaul to use convenience libraries in subdirectories. * scripts/miscellaneous/mkoctfile.m: Eliminate reference to LIBCRUFT. * src/mkoctfile.in.cc, src/mkoctfile.in.sh: Stop linking againt libcruft. Eliminate references to LIBCRUFT.
author Rik <rik@octave.org>
date Fri, 31 Aug 2012 20:00:20 -0700
parents liboctave/DASRT.cc@560317fd5977
children d63878346099
line wrap: on
line source

/*

Copyright (C) 2002-2012 John W. Eaton

This file is part of Octave.

Octave is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 3 of the License, or (at your
option) any later version.

Octave is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
for more details.

You should have received a copy of the GNU General Public License
along with Octave; see the file COPYING.  If not, see
<http://www.gnu.org/licenses/>.

*/

#ifdef HAVE_CONFIG_H
#include <config.h>
#endif

#include <cfloat>

#include <sstream>

#include "DASRT.h"
#include "f77-fcn.h"
#include "lo-error.h"
#include "lo-math.h"
#include "quit.h"

typedef octave_idx_type (*dasrt_fcn_ptr) (const double&, const double*,
                                          const double*, double*,
                                          octave_idx_type&, double*,
                                          octave_idx_type*);

typedef octave_idx_type (*dasrt_jac_ptr) (const double&, const double*,
                                          const double*, double*,
                                          const double&, double*,
                                          octave_idx_type*);

typedef octave_idx_type (*dasrt_constr_ptr) (const octave_idx_type&,
                                             const double&, const double*,
                                             const octave_idx_type&,
                                             double*, double*,
                                             octave_idx_type*);

extern "C"
{
  F77_RET_T
  F77_FUNC (ddasrt, DDASRT) (dasrt_fcn_ptr, const octave_idx_type&,
                             double&, double*, double*, const double&,
                             octave_idx_type*, const double*,
                             const double*, octave_idx_type&, double*,
                             const octave_idx_type&, octave_idx_type*,
                             const octave_idx_type&, double*,
                             octave_idx_type*, dasrt_jac_ptr,
                             dasrt_constr_ptr, const octave_idx_type&,
                             octave_idx_type*);
}

static DAEFunc::DAERHSFunc user_fsub;
static DAEFunc::DAEJacFunc user_jsub;
static DAERTFunc::DAERTConstrFunc user_csub;

static octave_idx_type nn;

static octave_idx_type
ddasrt_f (const double& t, const double *state, const double *deriv,
          double *delta, octave_idx_type& ires, double *, octave_idx_type *)
{
  BEGIN_INTERRUPT_WITH_EXCEPTIONS;

  ColumnVector tmp_state (nn);
  ColumnVector tmp_deriv (nn);

  for (octave_idx_type i = 0; i < nn; i++)
    {
      tmp_state(i) = state[i];
      tmp_deriv(i) = deriv[i];
    }

  ColumnVector tmp_fval = (*user_fsub) (tmp_state, tmp_deriv, t, ires);

  if (tmp_fval.length () == 0)
    ires = -2;
  else
    {
      for (octave_idx_type i = 0; i < nn; i++)
        delta[i] = tmp_fval(i);
    }

  END_INTERRUPT_WITH_EXCEPTIONS;

  return 0;
}

octave_idx_type
ddasrt_j (const double& time, const double *state, const double *deriv,
          double *pd, const double& cj, double *, octave_idx_type *)
{
  BEGIN_INTERRUPT_WITH_EXCEPTIONS;

  // FIXME -- would be nice to avoid copying the data.

  ColumnVector tmp_state (nn);
  ColumnVector tmp_deriv (nn);

  for (octave_idx_type i = 0; i < nn; i++)
    {
      tmp_deriv.elem (i) = deriv[i];
      tmp_state.elem (i) = state[i];
    }

  Matrix tmp_pd = (*user_jsub) (tmp_state, tmp_deriv, time, cj);

  for (octave_idx_type j = 0; j < nn; j++)
    for (octave_idx_type i = 0; i < nn; i++)
      pd[nn * j + i] = tmp_pd.elem (i, j);

  END_INTERRUPT_WITH_EXCEPTIONS;

  return 0;
}

static octave_idx_type
ddasrt_g (const octave_idx_type& neq, const double& t, const double *state,
          const octave_idx_type& ng, double *gout, double *, octave_idx_type *)
{
  BEGIN_INTERRUPT_WITH_EXCEPTIONS;

  octave_idx_type n = neq;

  ColumnVector tmp_state (n);
  for (octave_idx_type i = 0; i < n; i++)
    tmp_state(i) = state[i];

  ColumnVector tmp_fval = (*user_csub) (tmp_state, t);

  for (octave_idx_type i = 0; i < ng; i++)
    gout[i] = tmp_fval(i);

  END_INTERRUPT_WITH_EXCEPTIONS;

  return 0;
}

void
DASRT::integrate (double tout)
{
  DASRT_result retval;

  // I suppose this is the safe thing to do.  If this is the first
  // call, or if anything about the problem has changed, we should
  // start completely fresh.

  if (! initialized || restart
      || DAEFunc::reset || DAERTFunc::reset || DASRT_options::reset)
    {
      integration_error = false;

      initialized = true;

      info.resize (dim_vector (15, 1));

      for (octave_idx_type i = 0; i < 15; i++)
        info(i) = 0;

      octave_idx_type n = size ();

      nn = n;

      // DAERTFunc

      user_csub = DAERTFunc::constraint_function ();

      if (user_csub)
        {
          ColumnVector tmp = (*user_csub) (x, t);
          ng = tmp.length ();
        }
      else
        ng = 0;

      octave_idx_type maxord = maximum_order ();
      if (maxord >= 0)
        {
          if (maxord > 0 && maxord < 6)
            {
              info(8) = 1;
              iwork(2) = maxord;
            }
          else
            {
              (*current_liboctave_error_handler)
                ("dassl: invalid value for maximum order");
              integration_error = true;
              return;
            }
        }

      liw = 21 + n;
      lrw = 50 + 9*n + n*n + 3*ng;

      iwork.resize (dim_vector (liw, 1));
      rwork.resize (dim_vector (lrw, 1));

      info(0) = 0;

      if (stop_time_set)
        {
          info(3) = 1;
          rwork(0) = stop_time;
        }
      else
        info(3) = 0;

      restart = false;

      // DAEFunc

      user_fsub = DAEFunc::function ();
      user_jsub = DAEFunc::jacobian_function ();

      if (user_fsub)
        {
          octave_idx_type ires = 0;

          ColumnVector fval = (*user_fsub) (x, xdot, t, ires);

          if (fval.length () != x.length ())
            {
              (*current_liboctave_error_handler)
                ("dasrt: inconsistent sizes for state and residual vectors");

              integration_error = true;
              return;
            }
        }
      else
        {
          (*current_liboctave_error_handler)
            ("dasrt: no user supplied RHS subroutine!");

          integration_error = true;
          return;
        }

      info(4) = user_jsub ? 1 : 0;

      DAEFunc::reset = false;

      jroot.resize (dim_vector (ng, 1), 1);

      DAERTFunc::reset = false;

      // DASRT_options

      double mss = maximum_step_size ();
      if (mss >= 0.0)
        {
          rwork(1) = mss;
          info(6) = 1;
        }
      else
        info(6) = 0;

      double iss = initial_step_size ();
      if (iss >= 0.0)
        {
          rwork(2) = iss;
          info(7) = 1;
        }
      else
        info(7) = 0;

      if (step_limit () >= 0)
        {
          info(11) = 1;
          iwork(20) = step_limit ();
        }
      else
        info(11) = 0;

      abs_tol = absolute_tolerance ();
      rel_tol = relative_tolerance ();

      octave_idx_type abs_tol_len = abs_tol.length ();
      octave_idx_type rel_tol_len = rel_tol.length ();

      if (abs_tol_len == 1 && rel_tol_len == 1)
        {
          info.elem (1) = 0;
        }
      else if (abs_tol_len == n && rel_tol_len == n)
        {
          info.elem (1) = 1;
        }
      else
        {
          (*current_liboctave_error_handler)
            ("dasrt: inconsistent sizes for tolerance arrays");

          integration_error = true;
          return;
        }

      DASRT_options::reset = false;
    }

  double *px = x.fortran_vec ();
  double *pxdot = xdot.fortran_vec ();

  octave_idx_type *pinfo = info.fortran_vec ();

  double *prel_tol = rel_tol.fortran_vec ();
  double *pabs_tol = abs_tol.fortran_vec ();

  double *prwork = rwork.fortran_vec ();
  octave_idx_type *piwork = iwork.fortran_vec ();

  octave_idx_type *pjroot = jroot.fortran_vec ();

  double *dummy = 0;
  octave_idx_type *idummy = 0;

  F77_XFCN (ddasrt, DDASRT, (ddasrt_f, nn, t, px, pxdot, tout, pinfo,
                             prel_tol, pabs_tol, istate, prwork, lrw,
                             piwork, liw, dummy, idummy, ddasrt_j,
                             ddasrt_g, ng, pjroot));

  switch (istate)
    {
    case 1: // A step was successfully taken in intermediate-output
            // mode. The code has not yet reached TOUT.
    case 2: // The integration to TOUT was successfully completed
            // (T=TOUT) by stepping exactly to TOUT.
    case 3: // The integration to TOUT was successfully completed
            // (T=TOUT) by stepping past TOUT.  Y(*) is obtained by
            // interpolation.  YPRIME(*) is obtained by interpolation.
      t = tout;
      break;

    case 4: //  The integration was successfully completed
            // by finding one or more roots of G at T.
      break;

    case -1: // A large amount of work has been expended.
    case -2: // The error tolerances are too stringent.
    case -3: // The local error test cannot be satisfied because you
             // specified a zero component in ATOL and the
             // corresponding computed solution component is zero.
             // Thus, a pure relative error test is impossible for
             // this component.
    case -6: // DDASRT had repeated error test failures on the last
             // attempted step.
    case -7: // The corrector could not converge.
    case -8: // The matrix of partial derivatives is singular.
    case -9: // The corrector could not converge.  There were repeated
             // error test failures in this step.
    case -10: // The corrector could not converge because IRES was
              // equal to minus one.
    case -11: // IRES equal to -2 was encountered and control is being
              // returned to the calling program.
    case -12: // DASSL failed to compute the initial YPRIME.
    case -33: // The code has encountered trouble from which it cannot
              // recover. A message is printed explaining the trouble
              // and control is returned to the calling program. For
              // example, this occurs when invalid input is detected.
      integration_error = true;
      break;

    default:
      integration_error = true;
      (*current_liboctave_error_handler)
        ("unrecognized value of istate (= %d) returned from ddasrt",
         istate);
      break;
    }
}

DASRT_result
DASRT::integrate (const ColumnVector& tout)
{
  DASRT_result retval;

  Matrix x_out;
  Matrix xdot_out;
  ColumnVector t_out = tout;

  octave_idx_type n_out = tout.capacity ();
  octave_idx_type n = size ();

  if (n_out > 0 && n > 0)
    {
      x_out.resize (n_out, n);
      xdot_out.resize (n_out, n);

      for (octave_idx_type i = 0; i < n; i++)
        {
          x_out(0,i) = x(i);
          xdot_out(0,i) = xdot(i);
        }

      for (octave_idx_type j = 1; j < n_out; j++)
        {
          integrate (tout(j));

          if (integration_error)
            {
              retval = DASRT_result (x_out, xdot_out, t_out);
              return retval;
            }

          if (istate == 4)
            t_out(j) = t;
          else
            t_out(j) = tout(j);

          for (octave_idx_type i = 0; i < n; i++)
            {
              x_out(j,i) = x(i);
              xdot_out(j,i) = xdot(i);
            }

          if (istate == 4)
            {
              x_out.resize (j+1, n);
              xdot_out.resize (j+1, n);
              t_out.resize (j+1);
              break;
            }
        }
    }

  retval = DASRT_result (x_out, xdot_out, t_out);

  return retval;
}

DASRT_result
DASRT::integrate (const ColumnVector& tout, const ColumnVector& tcrit)
{
  DASRT_result retval;

  Matrix x_out;
  Matrix xdot_out;
  ColumnVector t_outs = tout;

  octave_idx_type n_out = tout.capacity ();
  octave_idx_type n = size ();

  if (n_out > 0 && n > 0)
    {
      x_out.resize (n_out, n);
      xdot_out.resize (n_out, n);

      octave_idx_type n_crit = tcrit.capacity ();

      if (n_crit > 0)
        {
          octave_idx_type i_crit = 0;
          octave_idx_type i_out = 1;
          double next_crit = tcrit(0);
          double next_out;
          while (i_out < n_out)
            {
              bool do_restart = false;

              next_out = tout(i_out);
              if (i_crit < n_crit)
                next_crit = tcrit(i_crit);

              octave_idx_type save_output;
              double t_out;

              if (next_crit == next_out)
                {
                  set_stop_time (next_crit);
                  t_out = next_out;
                  save_output = 1;
                  i_out++;
                  i_crit++;
                  do_restart = true;
                }
              else if (next_crit < next_out)
                {
                  if (i_crit < n_crit)
                    {
                      set_stop_time (next_crit);
                      t_out = next_crit;
                      save_output = 0;
                      i_crit++;
                      do_restart = true;
                    }
                  else
                    {
                      clear_stop_time ();
                      t_out = next_out;
                      save_output = 1;
                      i_out++;
                    }
                }
              else
                {
                  set_stop_time (next_crit);
                  t_out = next_out;
                  save_output = 1;
                  i_out++;
                }

              integrate (t_out);

              if (integration_error)
                {
                  retval = DASRT_result (x_out, xdot_out, t_outs);
                  return retval;
                }

              if (istate == 4)
                t_out = t;

              if (save_output)
                {
                  for (octave_idx_type i = 0; i < n; i++)
                    {
                      x_out(i_out-1,i) = x(i);
                      xdot_out(i_out-1,i) = xdot(i);
                    }

                  t_outs(i_out-1) = t_out;

                  if (istate == 4)
                    {
                      x_out.resize (i_out, n);
                      xdot_out.resize (i_out, n);
                      t_outs.resize (i_out);
                      i_out = n_out;
                    }
                }

              if (do_restart)
                force_restart ();
            }

          retval = DASRT_result (x_out, xdot_out, t_outs);
        }
      else
        {
          retval = integrate (tout);

          if (integration_error)
            return retval;
        }
    }

  return retval;
}

std::string
DASRT::error_message (void) const
{
  std::string retval;

  std::ostringstream buf;
  buf << t;
  std::string t_curr = buf.str ();

  switch (istate)
    {
    case 1:
      retval = "a step was successfully taken in intermediate-output mode.";
      break;

    case 2:
      retval = "integration completed by stepping exactly to TOUT";
      break;

    case 3:
      retval = "integration to tout completed by stepping past TOUT";
      break;

    case 4:
      retval = "integration completed by finding one or more roots of G at T";
      break;

    case -1:
      retval = std::string ("a large amount of work has been expended (t =")
        + t_curr + ")";
      break;

    case -2:
      retval = "the error tolerances are too stringent";
      break;

    case -3:
      retval = std::string ("error weight became zero during problem. (t = ")
        + t_curr
        + "; solution component i vanished, and atol or atol(i) == 0)";
      break;

    case -6:
      retval = std::string ("repeated error test failures on the last attempted step (t = ")
        + t_curr + ")";
      break;

    case -7:
      retval = std::string ("the corrector could not converge (t = ")
        + t_curr + ")";
      break;

    case -8:
      retval = std::string ("the matrix of partial derivatives is singular (t = ")
        + t_curr + ")";
      break;

    case -9:
      retval = std::string ("the corrector could not converge (t = ")
        + t_curr + "; repeated test failures)";
      break;

    case -10:
      retval = std::string ("corrector could not converge because IRES was -1 (t = ")
        + t_curr + ")";
      break;

    case -11:
      retval = std::string ("return requested in user-supplied function (t = ")
        + t_curr + ")";
      break;

    case -12:
      retval = "failed to compute consistent initial conditions";
      break;

    case -33:
      retval = "unrecoverable error (see printed message)";
      break;

    default:
      retval = "unknown error state";
      break;
    }

  return retval;
}