annotate scripts/statistics/models/logistic_regression_likelihood.m @ 10400:b14fd5116c29

Ensure that 'limits' is a 2 or 4 vector, and that 'fn' is a function
author Soren Hauberg <hauberg@gmail.com>
date Fri, 05 Mar 2010 14:29:47 -0800
parents f084ba47812b
children fd0a3ac60b0e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
7017
a1dbe9d80eee [project @ 2007-10-12 21:27:11 by jwe]
jwe
parents: 7016
diff changeset
1 ## Copyright (C) 1995, 1996, 1997, 1998, 1999, 2000, 2002, 2005, 2007
a1dbe9d80eee [project @ 2007-10-12 21:27:11 by jwe]
jwe
parents: 7016
diff changeset
2 ## Kurt Hornik
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
3 ##
3922
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3456
diff changeset
4 ## This file is part of Octave.
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3456
diff changeset
5 ##
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3456
diff changeset
6 ## Octave is free software; you can redistribute it and/or modify it
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3456
diff changeset
7 ## under the terms of the GNU General Public License as published by
7016
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 5428
diff changeset
8 ## the Free Software Foundation; either version 3 of the License, or (at
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 5428
diff changeset
9 ## your option) any later version.
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
10 ##
3922
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3456
diff changeset
11 ## Octave is distributed in the hope that it will be useful, but
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
12 ## WITHOUT ANY WARRANTY; without even the implied warranty of
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
13 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
14 ## General Public License for more details.
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
15 ##
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
16 ## You should have received a copy of the GNU General Public License
7016
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 5428
diff changeset
17 ## along with Octave; see the file COPYING. If not, see
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 5428
diff changeset
18 ## <http://www.gnu.org/licenses/>.
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
19
3454
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
20 ## -*- texinfo -*-
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
21 ## @deftypefn {Function File} {[@var{g}, @var{g1}, @var{p}, @var{dev}] =} logistic_regression_likelihood (@var{y}, @var{x}, @var{beta}, @var{z}, @var{z1})
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
22 ## Calculates likelihood for the ordinal logistic regression model.
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
23 ## Called by logistic_regression.
3454
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
24 ## @end deftypefn
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
25
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
26 ## Author: Gordon K. Smyth <gks@maths.uq.oz.au>
5428
2a16423e4aa0 [project @ 2005-08-23 18:38:27 by jwe]
jwe
parents: 5307
diff changeset
27 ## Adapted-By: KH <Kurt.Hornik@wu-wien.ac.at>
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3454
diff changeset
28 ## Description: Likelihood in logistic regression
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
29
3454
d8b731d3f7a3 [project @ 2000-01-18 10:13:31 by jwe]
jwe
parents: 3426
diff changeset
30 function [g, g1, p, dev] = logistic_regression_likelihood (y, x, beta, z, z1)
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
31
7125
f084ba47812b [project @ 2007-11-08 02:29:23 by jwe]
jwe
parents: 7017
diff changeset
32 if (nargin != 5)
f084ba47812b [project @ 2007-11-08 02:29:23 by jwe]
jwe
parents: 7017
diff changeset
33 print_usage ();
f084ba47812b [project @ 2007-11-08 02:29:23 by jwe]
jwe
parents: 7017
diff changeset
34 endif
f084ba47812b [project @ 2007-11-08 02:29:23 by jwe]
jwe
parents: 7017
diff changeset
35
3238
041ea33fbbf4 [project @ 1999-03-26 17:48:16 by jwe]
jwe
parents: 3191
diff changeset
36 e = exp ([z, x] * beta); e1 = exp ([z1, x] * beta);
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
37 g = e ./ (1 + e); g1 = e1 ./ (1 + e1);
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
38 g = max (y == max (y), g); g1 = min (y > min(y), g1);
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
39
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
40 p = g - g1;
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3238
diff changeset
41 dev = -2 * sum (log (p));
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
42
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
43 endfunction